All functions

annotate_clusters()

Annotate data frame with clusters

bin_df

Simulated binary data

cluster_boxplots()

Plot boxplots with clusters

cluster_colors

List of colors used in the Shiny app for clusters

cluster_heatmaps()

Plot heatmap with cluster results and dendrogram

compute_clusters()

Compute clusters hierarchically from distance matrix

compute_dmat()

Compute a distance matrix from scaled data

compute_gapstat()

Compute Gap statistic for clustered data

compute_metric()

Compute an internal evaluation metric for clustered data

correlation_heatmap()

Plot a correlation heatmap

create_annotations()

Create heatmap annotations from selected variables

cut_clusters()

Cut a hierarchical tree targeting k clusters

dmat_projection()

Plot a 2D MDS projection of a distance matrix

facet_boxplot()

Faceted boxplots with points or violin plots

line_plot()

A custom line plot with optional vertical line

logscaled_df

Simulated logscaled data

normal_annotated

Simulated normal data with annotations

normal_df

Simulated normal data

normal_missing

Simulated normal data with missing values

optimal_score()

Find minimum or maximum score in a vector

plot_annotation_dist()

Plot distribution of annotation data across clusters

run_app()

Runs the Shiny app